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Old 04-25-2013, 03:41 PM   #1
gene_x
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Default Finding orthologous sequence in human

Hi, all,
I have a bunch of mouse sequences and would like to find the orthologous human sequences. How to do this?

I found this earlier post: http://seqanswers.com/forums/showthread.php?t=23379

It's for plants.. I think there should be some tool for vertebrates out there.

Thanks!
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Old 04-25-2013, 04:23 PM   #2
GenoMax
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Homologene from NCBI: http://www.ncbi.nlm.nih.gov/homologene

Comparative genomics at Ensembl: http://useast.ensembl.org/info/docs/compara/index.html

Pairwise alignments: http://hgdownload.soe.ucsc.edu/downloads.html#mouse
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Old 05-02-2013, 02:51 PM   #3
gene_x
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Quote:
Originally Posted by GenoMax View Post
Thanks. I also found this post on biostar:

http://www.biostars.org/p/65558/
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