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Old 12-27-2013, 09:35 AM   #1
Location: USA

Join Date: Oct 2012
Posts: 10
Default Site-wise Log-Likelihood


I have several thousand sets of CDS from more 20 species. I would like to determine the Site-wise Log-Likelihood support for all amino acids for a given tree. Then I would like to compare the mean SSLS for each gene with an alternate tree. How do you obtain a list of SSLS values for a given set of CDSs for 20 species? If using PAML or RAxML, what commands will produce the correct file?

rdoan is offline   Reply With Quote

bioinfomatics, comparative genomics, evolutionary biology, paml, raxml

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