This is fast, portable .... and in the Public Domain. No registration. Source is available. GUI executables for MAC, Linux 64 bit, Windows 64bit are available.
Alview ( ALignment VIEWer ) is a fast, compiled to native architecture computer program for visualizing the alignment of sequencing data. The inputs are files of short read sequences aligned to a reference genome in the SAM/BAM format. Outputs are images representing these short reads aligned to the genome. Alview is written in portable C with optional Graphical User Interface (GUI) code written in C++. Alview can be compiled to run in three different ways:
1) as a webserver (CGI, apache, probably works with NGINX)
2) as a command line tool (just batch up a script and review those calls fast !!!)
or
3) as a native graphical user interface executable. (Explore that BAM at the speed of your curiosity)
It is compatible with Microsoft Windows, Linux and Apple OS X.
COMMERCIAL REDISTRIBUTION OF GUI WILL REQUIRE PURCHASE OF Qt LICENSE. But that's only if you're forking it and and trying to make some bucks. Otherwise, do what you want to.
Availability:
Web Demo: https://cgwb.nci.nih.gov/cgi-bin/alview
Source and Windows/Mac/Linux packages: https://github.com/NCIP/alview
THIS IS BRAND NEW, SO I"D APPRECIATE ANY FEEDBACK AND WILL FIX IT PRONTO.
Alview ( ALignment VIEWer ) is a fast, compiled to native architecture computer program for visualizing the alignment of sequencing data. The inputs are files of short read sequences aligned to a reference genome in the SAM/BAM format. Outputs are images representing these short reads aligned to the genome. Alview is written in portable C with optional Graphical User Interface (GUI) code written in C++. Alview can be compiled to run in three different ways:
1) as a webserver (CGI, apache, probably works with NGINX)
2) as a command line tool (just batch up a script and review those calls fast !!!)
or
3) as a native graphical user interface executable. (Explore that BAM at the speed of your curiosity)
It is compatible with Microsoft Windows, Linux and Apple OS X.
COMMERCIAL REDISTRIBUTION OF GUI WILL REQUIRE PURCHASE OF Qt LICENSE. But that's only if you're forking it and and trying to make some bucks. Otherwise, do what you want to.
Availability:
Web Demo: https://cgwb.nci.nih.gov/cgi-bin/alview
Source and Windows/Mac/Linux packages: https://github.com/NCIP/alview
THIS IS BRAND NEW, SO I"D APPRECIATE ANY FEEDBACK AND WILL FIX IT PRONTO.
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