SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Deseq2 results discrepancies because of versions of R genomica Bioinformatics 3 10-23-2015 04:31 AM
Combining data from different CASAVA versions mbrauer Illumina/Solexa 1 06-19-2012 03:09 AM
Different versions of samtools-pileup dg.pooja Bioinformatics 3 02-11-2011 08:46 AM
keeping track of versions mgogol Bioinformatics 1 02-08-2011 02:33 PM
MAQ versions... aleferna Bioinformatics 1 07-22-2010 02:57 AM

Reply
 
Thread Tools
Old 12-12-2015, 01:04 AM   #1
RikyJKD
Member
 
Location: Torino

Join Date: Jul 2014
Posts: 17
Default DESeq2 old versions

Hi,I am a PhD student and i would like to know if it is possible to find online the previuos versions of DESeq2 and where.Thank you.

Best regards.

Riccardo
RikyJKD is offline   Reply With Quote
Old 12-12-2015, 03:27 AM   #2
mastal
Senior Member
 
Location: uk

Join Date: Mar 2009
Posts: 666
Default

The Bioconductor website.

https://www.bioconductor.org/

But note that they will only run under older versions of R.

https://www.r-project.org/

also from github:
https://github.com/Bioconductor-mirror/DESeq2

Last edited by mastal; 12-12-2015 at 03:31 AM.
mastal is offline   Reply With Quote
Old 12-13-2015, 05:57 AM   #3
RikyJKD
Member
 
Location: Torino

Join Date: Jul 2014
Posts: 17
Default

Thank you. I have already tried bioconductor and github but I have not seen the possibility to download, for example, the version 1.8 and others. Is there this chance to do this download in these sites?
Thank you.
RikyJKD is offline   Reply With Quote
Old 12-13-2015, 09:40 AM   #4
mastal
Senior Member
 
Location: uk

Join Date: Mar 2009
Posts: 666
Default

See the lists of packages for previous bioconductor versions:

There is a section called Previous Releases on the right hand side of
the following web page:
http://bioconductor.org/packages/3.2/bioc/

Try looking at the package lists and see which previous versions list DESeq2.

For example:
http://bioconductor.org/packages/2.1...ml/DESeq2.html
mastal is offline   Reply With Quote
Old 12-15-2015, 01:39 AM   #5
RikyJKD
Member
 
Location: Torino

Join Date: Jul 2014
Posts: 17
Default

Thank you.

Riccardo
RikyJKD is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:35 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO