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Old 04-15-2009, 05:47 AM   #1
BAJ
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Location: Paris

Join Date: Nov 2008
Posts: 15
Default swift related question

Hi,

I am working on NGS/Solexa data analysis. I am currently experimenting with swift for the image analysis, having some very encouraging results.

I am looking for a way to view/extract the spots in the images for a given cluster. I assume that something like “@L7-60:1088:106” in the .pf files indicates among others the x/y position of the cluster (x=1088; y=106) ????. I just can’t find the registration information for how the image have been registered. The runreport has the offsetmaps, but I have no clue what they mean and how I would use them…

Could you please point me in the right direction ?

I was thinking of using R, Matlab, or gnuplot for the visualization.

Thanks,

Bernd
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