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  • RepeatModeler genomic assembly BuildDatabase error

    Hi folks,
    I faced a problem when I am running in a server BuildDatabase before RepeatModeler using a multifasta genome assembly (1g_modif.fasta) containing 12 unitigs, with nucleotides letters in capital, and sequences names as U1,U2,U3 etc. My command is as follow:

    BuildDatabase -name 1g -engine ncbi 1g_modif.fasta

    The BuildDatabase is running instantly but the following is depicted

    Building database 1g:
    Adding 1g_modif.fasta to database
    Number of sequences (bp) added to database: 0 ( 0 bp )


    Seems that the database didnt manage to add any sequences (unitigs) and bp in the database. I guess the problem should be probably in the format of the input multifasta file of the genomic assemble but really I dont know where exactly

    Any ideas or suggestions?
    Thanks in advance

  • #2
    I met the same problem.

    Comment


    • #3
      I solved it by using rmblast version 2.2.23.

      Hope this helps!
      Last edited by RoseString; 04-11-2016, 07:05 PM.

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