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Old 10-05-2015, 08:13 AM   #1
Location: milan

Join Date: Jul 2015
Posts: 26
Default homopolymer, steps after alignment

I am implementing my pipeline and I have to start the steps after alignment. I have see on GATK pipeline that I have to do local realignment (indel realignment) but the problem of 454 Roche is the homopolymer, so I would like know if there is an other tool that I have to use.

Thank you in advance
pingu is offline   Reply With Quote

gatk indelrealigner, homopolymer, my pipeline, roche 454

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