Hi,
I have some trouble with removing redundant feature in a fasta file. I want to create an indexe for Bowtie.
I have this file :
But some feature have the same sequence but differ in length. I want to keep only the longer sequence. Finally, i would like to have a file like :
I don't know how i can do this ... maybe someone can help me ?
Thanks in advance for your reply !
I have some trouble with removing redundant feature in a fasta file. I want to create an indexe for Bowtie.
I have this file :
Code:
>pi1 [B]ATGCGTGAAATGCAT[/B] >pi2 TGCCCTGATAGGGACCAGTAGAC >pi3 [B]ATGCGTGAAATGCAT[/B]A >pi4 TGCATGACTA >pi5 [B]ATGCGTGAAATGCAT[/B]AT
Code:
>pi2 TGCCCTGATAGGGACCAGTAGAC >pi4 TGCATGACTA >pi5 [B]ATGCGTGAAATGCAT[/B]AT
Thanks in advance for your reply !
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