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Old 12-22-2014, 11:11 PM   #1
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Location: Russia

Join Date: Oct 2012
Posts: 1
Default vcf-compare: tabix index is broken


I'm trying to compare two vcf-files (see the attachment) using vcftools_0.1.12b. The files have one mismatched varinat (chr9). This variant is not found by vcf-compare tool since the tabix index is broken. What is the problem with my vcf file? Both vcf files were created with Ion PGM instruments.

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