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Old 12-01-2016, 04:51 AM   #1
Yasmin Lima
Junior Member
 
Location: Brasília, Brazil

Join Date: Jan 2016
Posts: 2
Default dbNFSP annotation

Hello everyone

I am a beginner in the next generation world.

I have some data to analyze and I am confused about the dbNFSP database annotation...

I can interpret very well the annotation because I can find easy information about the range scores of some algorithms, like PhyloP, LTR, MutationTaster and other. Do they range from 0 to 1, 0 to 10, or what?

I mean, I have a value but I can interpret because I don't know which are the parameters...

I have used Annovar, but the Annovar documentation for these algorithms is very poor in informations about.

Anyone knows where I can find these informations, please?
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Old 12-01-2016, 06:26 AM   #2
vivek_
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Location: Denmark

Join Date: Jul 2012
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Default

You can get the descriptions from a readme file included in the dbNSFP distribution.

https://sites.google.com/site/jpopgen/dbNSFP
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