Hi, all,
I encountered an error when running sff_extract to convert an sff file (~1.5GB) to fasta, fasta.qual and xml. The error message is:
File "/usr/local/bin/sff_extract", line 1505, in ?
sys.exit(main())
File "/usr/local/bin/sff_extract", line 1492, in main
extract_reads_from_sff(config, args)
File "/usr/local/bin/sff_extract", line 1041, in extract_reads_from_sff
for seq_data in sequences(fileh=sff_fh, header=header_data):
File "/usr/local/bin/sff_extract", line 255, in sequences
fposition=fposition)
File "/usr/local/bin/sff_extract", line 184, in read_sequence
data=data, byte_padding=8)
File "/usr/local/bin/sff_extract", line 74, in read_bin_fragment
read = struct.unpack('>' + item[1], buffer)
MemoryError
Please, anyone knows what caused the error, and how to solve the issue?
Thanks!
I encountered an error when running sff_extract to convert an sff file (~1.5GB) to fasta, fasta.qual and xml. The error message is:
File "/usr/local/bin/sff_extract", line 1505, in ?
sys.exit(main())
File "/usr/local/bin/sff_extract", line 1492, in main
extract_reads_from_sff(config, args)
File "/usr/local/bin/sff_extract", line 1041, in extract_reads_from_sff
for seq_data in sequences(fileh=sff_fh, header=header_data):
File "/usr/local/bin/sff_extract", line 255, in sequences
fposition=fposition)
File "/usr/local/bin/sff_extract", line 184, in read_sequence
data=data, byte_padding=8)
File "/usr/local/bin/sff_extract", line 74, in read_bin_fragment
read = struct.unpack('>' + item[1], buffer)
MemoryError
Please, anyone knows what caused the error, and how to solve the issue?
Thanks!
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