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I have tried zorro on a genome of 450 MBp and I advise you not to try this. It is far too slow and basically unusable on a genome of this size.
I work on a project together with the developers of GAM and although nothing is public yet (and I am not sure when it will be) I have been testing an updated version designed to handle NGS assemblies and the results are excellent and the speed is also great. I will talk to the developer to ask when a public release could be possible.
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