Dear All,
I did an RNA-seq by using Illumina and now i would like to assemble it. I already used velvet and I got some nice results. However the assembly is not good enough. In NCBI there are some related species that are sequenced and I could give a try in assemble the RNA-seq data with these genomes. Can you suggest some software that I can use? As a input file, I have a FASTQ file.
Thanks
Luigi
I did an RNA-seq by using Illumina and now i would like to assemble it. I already used velvet and I got some nice results. However the assembly is not good enough. In NCBI there are some related species that are sequenced and I could give a try in assemble the RNA-seq data with these genomes. Can you suggest some software that I can use? As a input file, I have a FASTQ file.
Thanks
Luigi
Comment