Hi,
I'm currently analyzing small-RNA-seq data coming from 2 different samples which only have *.fasta format. Unfortunately they do no have replicates.
Which software that I can use to analyze their differential expression?
Following is the format of my data. t0000001 is ID, and 537124 is the reads number.
Any suggestions are appreciate!
li
>t0000001_x537124
CCCGACCTCAGATCAGATGA
>t0000002_x340107
TCACCGGGTAGACATTCATTAT
>t0000003_x268409
TGAAAGACATGGGTAGTGAGAT
>t0000004_x172657
CGATATGTGGTAATTTGGATGA
>t0000005_x154782
AGAGGTAGTGATTCAAAAAGTT
>t0000006_x140076
TCACCGGGTAGACATTCATTATA
>t0000007_x131590
TGAGATCACTATGAAAGCTGG
>t0000008_x125368
TGAGGTAGAATGTTGGATGACT
>t0000009_x120455
TGAGTATTGCATCAAGAACCGA
>t0000010_x95804
TCCCTGAGACCATTGACTGCAT
>t0000011_x78210
TGGACGGAAGTGTAATGAGGGT
>t0000012_x73438
TGAGGTAGATTGTTGGATGACT
>t0000013_x68884
CCCGACCTCAGATCAGATG
>t0000014_x60358
TGAAAGACACAGGTAGTGGGACA
>t0000015_x59786
TGGAATGTCGAGAAATATGCAT
>t0000016_x44935
TCCCTGAGACCATTGACT
I'm currently analyzing small-RNA-seq data coming from 2 different samples which only have *.fasta format. Unfortunately they do no have replicates.
Which software that I can use to analyze their differential expression?
Following is the format of my data. t0000001 is ID, and 537124 is the reads number.
Any suggestions are appreciate!
li
>t0000001_x537124
CCCGACCTCAGATCAGATGA
>t0000002_x340107
TCACCGGGTAGACATTCATTAT
>t0000003_x268409
TGAAAGACATGGGTAGTGAGAT
>t0000004_x172657
CGATATGTGGTAATTTGGATGA
>t0000005_x154782
AGAGGTAGTGATTCAAAAAGTT
>t0000006_x140076
TCACCGGGTAGACATTCATTATA
>t0000007_x131590
TGAGATCACTATGAAAGCTGG
>t0000008_x125368
TGAGGTAGAATGTTGGATGACT
>t0000009_x120455
TGAGTATTGCATCAAGAACCGA
>t0000010_x95804
TCCCTGAGACCATTGACTGCAT
>t0000011_x78210
TGGACGGAAGTGTAATGAGGGT
>t0000012_x73438
TGAGGTAGATTGTTGGATGACT
>t0000013_x68884
CCCGACCTCAGATCAGATG
>t0000014_x60358
TGAAAGACACAGGTAGTGGGACA
>t0000015_x59786
TGGAATGTCGAGAAATATGCAT
>t0000016_x44935
TCCCTGAGACCATTGACT
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