SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Contig vs contig or map against contig lib? JackieBadger Bioinformatics 1 05-30-2016 06:34 AM
Get coverage of each site on contig generated by Velvet genelab Bioinformatics 5 08-03-2013 11:40 PM
Failure of transforming Velvet .afg file into GDE .contig file ZhigangLi Bioinformatics 0 11-25-2010 06:03 PM
solid_denovo_postprocessor.pl removes velvet contig sequence. KevinLam Bioinformatics 0 02-09-2010 06:04 PM

Reply
 
Thread Tools
Old 10-25-2012, 05:24 PM   #1
deprekate
Junior Member
 
Location: San Diego

Join Date: Oct 2012
Posts: 4
Default truncation of contig in velvet

Hi I have playing with velvet and I found this strange artifact when assembling data. When I have the following 2 sequences they get assembled into 2 contigs, both of which seem to have been clipped at the end.


Why was the "TAGTAATATAAAGATA..." not included in the contigs since the sequences matched exactly
deprekate is offline   Reply With Quote
Reply

Tags
assembly, contig, sequence, velvet

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:23 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO