Hello,
i am trying to figure out how to interpret phase sets in a VCF file
let's say, i have a VCF file with phased genotypes
chr1 1 0/1
chr1 2 0/1
chr1 3 0|1
chr1 4 1|0
chr1 5 1|0
chr1 6 0/1
chr1 7 0|1
The genotypes at position 3,4 and 5 are phased and they are in the same phase set; but what about the genotype at position 2? does it belong to this phase set or not?
i am trying to figure out how to interpret phase sets in a VCF file
let's say, i have a VCF file with phased genotypes
chr1 1 0/1
chr1 2 0/1
chr1 3 0|1
chr1 4 1|0
chr1 5 1|0
chr1 6 0/1
chr1 7 0|1
The genotypes at position 3,4 and 5 are phased and they are in the same phase set; but what about the genotype at position 2? does it belong to this phase set or not?