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Old 11-02-2017, 02:41 AM   #1
puneet_shivanand
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Location: Bangalore

Join Date: Oct 2017
Posts: 2
Default 1000 genomes data format

Hello, Can i get a brief overview on data that is stored in 1000 genomes phase 3 dataset for a single sample name such as HG00113 there a multitude of fastq paired end reads in their ftp server

ERR020088_1.filt.fastq.gz 24.6 GB
ERR020088_2.filt.fastq.gz 24.7 GB
ERR229776.filt.fastq.gz 360 MB
ERR229776_1.filt.fastq.gz 9.4 GB
ERR229776_2.filt.fastq.gz 9.7 GB
SRR070517.filt.fastq.gz 7.4 MB
SRR070517_1.filt.fastq.gz 2.2 GB
SRR070517_2.filt.fastq.gz 2.3 GB
SRR070802.filt.fastq.gz 6.8 MB
SRR070802_1.filt.fastq.gz 2.2 GB
SRR070802_2.filt.fastq.gz 2.3 GB

can someone explain as how to interpret the data is it the same sample or different samples that are included in the same run accession.

why do i get multiple set of paired end reads ??

Last edited by puneet_shivanand; 11-02-2017 at 10:07 PM.
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1000 genomes project, exome data, phase 3 1000 genomes

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