Dear all,
I have 3 illumina metageome sequence files of the same sample, with different insert size in each. Insert sizes are 300, 400 & 600 bp.
What is the best assembly strategy? Should I merge the files using FLASh, then assemble the merged files using metavelvet or Raymeta? Or should I assemble them individually, then scaffold them using something like Bambus2?
Thanks
I have 3 illumina metageome sequence files of the same sample, with different insert size in each. Insert sizes are 300, 400 & 600 bp.
What is the best assembly strategy? Should I merge the files using FLASh, then assemble the merged files using metavelvet or Raymeta? Or should I assemble them individually, then scaffold them using something like Bambus2?
Thanks
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