Hi,
I'm trying to make PINDEL report only deletions without any other SV types.
The manual says:
But I couldn't figure out how to switch these parameters. How should the command look exactly? I tried --report_inversions false; --report_inversions=false; --report_inversions=FALSE; --report_inversions 0. Nothing worked.
Thank you!
I'm trying to make PINDEL report only deletions without any other SV types.
The manual says:
-r/--report_inversions
report inversions (default true)
-t/--report_duplications
report tandem duplications (default true)
-l/--report_long_insertions
report insertions of which the full sequence cannot be deduced because of their length (default true)
-k/--report_breakpoints
report breakpoints (default true)
report inversions (default true)
-t/--report_duplications
report tandem duplications (default true)
-l/--report_long_insertions
report insertions of which the full sequence cannot be deduced because of their length (default true)
-k/--report_breakpoints
report breakpoints (default true)
Thank you!