Hi All,
We like to use miRExpress software (http://mirexpress.mbc.nctu.edu.tw/) for our microRNA-seq data. I tried to run the example file however I am getting error as Segmentation fault with /miRExpress/bin/analysis script. Can you please help me with it? Also, it does not generate any particular output with alignmentSIMD script apart from no-hit file and a temp directory.
I am running following commands:
/miRExpress/bin/Raw_data_parse -i /Example/example
/miRExpress/bin/Trim_adapter -i /Example/example.merge -t /Example/3_adaptor.txt
/miRExpress/bin/statistics_reads -i /Example/example.merge.trim
/miRExpress/bin/alignmentSIMD -r data/hsa_precursor.txt -i /Example/example.merge.trim -o /Example/Output/ -t 0.9 -n /Example/Output/Example_nohit.txt
/data/hemang/Software/Sequencing/miRNA/miRExpress/bin/analysis -r data/hsa_precursor.txt -m data/hsa_miRNA.txt -d /Example/Output -o /Example/Example_alignment.txt -t /Example/example_expression.txt
Thanks for your kind help,
Best wishes,
Rakesh
We like to use miRExpress software (http://mirexpress.mbc.nctu.edu.tw/) for our microRNA-seq data. I tried to run the example file however I am getting error as Segmentation fault with /miRExpress/bin/analysis script. Can you please help me with it? Also, it does not generate any particular output with alignmentSIMD script apart from no-hit file and a temp directory.
I am running following commands:
/miRExpress/bin/Raw_data_parse -i /Example/example
/miRExpress/bin/Trim_adapter -i /Example/example.merge -t /Example/3_adaptor.txt
/miRExpress/bin/statistics_reads -i /Example/example.merge.trim
/miRExpress/bin/alignmentSIMD -r data/hsa_precursor.txt -i /Example/example.merge.trim -o /Example/Output/ -t 0.9 -n /Example/Output/Example_nohit.txt
/data/hemang/Software/Sequencing/miRNA/miRExpress/bin/analysis -r data/hsa_precursor.txt -m data/hsa_miRNA.txt -d /Example/Output -o /Example/Example_alignment.txt -t /Example/example_expression.txt
Thanks for your kind help,
Best wishes,
Rakesh
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