Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • #16
    Hi again,

    I got this,


    echo $PATH
    /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin
    echo $LD_LIBRARY_PATH

    type mpiexec
    mpiexec is /usr/bin/mpiexec

    type mpicxx
    mpicxx is /usr/bin/mpicxx

    type ompi_info
    ompi_info is /usr/bin/ompi_info

    find /usr/local|grep mpi
    /usr/local/bin/mpic++
    /usr/local/bin/mpic++-vt
    /usr/local/bin/mpicc
    /usr/local/bin/mpicc-vt
    /usr/local/bin/mpicxx
    /usr/local/bin/mpicxx-vt
    /usr/local/bin/mpiexec
    /usr/local/bin/mpif77
    /usr/local/bin/mpif77-vt
    /usr/local/bin/mpif90
    /usr/local/bin/mpif90-vt
    /usr/local/bin/mpirun
    /usr/local/bin/ompi-clean
    /usr/local/bin/ompi-iof
    /usr/local/bin/ompi-probe
    /usr/local/bin/ompi-profiler
    /usr/local/bin/ompi-ps
    /usr/local/bin/ompi-server
    /usr/local/bin/ompi-top
    /usr/local/bin/ompi_info
    /usr/local/bin/otfmerge-mpi
    /usr/local/bin/otfprofile-mpi
    /usr/local/bin/vtfilter-mpi
    /usr/local/bin/vtfiltergen-mpi
    /usr/local/bin/vtunify-mpi
    /usr/local/etc/openmpi-default-hostfile
    /usr/local/etc/openmpi-mca-params.conf
    /usr/local/etc/openmpi-totalview.tcl
    /usr/local/include/c++/4.6.0/bits/regex_compiler.h
    /usr/local/include/c++/4.6.0/parallel/compiletime_settings.h
    /usr/local/include/mpi-ext.h
    /usr/local/include/mpi.h
    /usr/local/include/mpi_portable_platform.h
    /usr/local/include/mpif-common.h
    /usr/local/include/mpif-config.h
    /usr/local/include/mpif-mpi-io.h
    /usr/local/include/mpif.h
    /usr/local/include/openmpi
    /usr/local/include/openmpi/ompi
    /usr/local/include/openmpi/ompi/mpi
    /usr/local/include/openmpi/ompi/mpi/cxx
    /usr/local/include/openmpi/ompi/mpi/cxx/comm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/comm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/constants.h
    /usr/local/include/openmpi/ompi/mpi/cxx/datatype.h
    /usr/local/include/openmpi/ompi/mpi/cxx/datatype_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/errhandler.h
    /usr/local/include/openmpi/ompi/mpi/cxx/errhandler_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/exception.h
    /usr/local/include/openmpi/ompi/mpi/cxx/file.h
    /usr/local/include/openmpi/ompi/mpi/cxx/file_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/functions.h
    /usr/local/include/openmpi/ompi/mpi/cxx/functions_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/group.h
    /usr/local/include/openmpi/ompi/mpi/cxx/group_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/info.h
    /usr/local/include/openmpi/ompi/mpi/cxx/info_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intercomm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intercomm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intracomm.h
    /usr/local/include/openmpi/ompi/mpi/cxx/intracomm_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/mpicxx.h
    /usr/local/include/openmpi/ompi/mpi/cxx/op.h
    /usr/local/include/openmpi/ompi/mpi/cxx/op_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/request.h
    /usr/local/include/openmpi/ompi/mpi/cxx/request_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/status.h
    /usr/local/include/openmpi/ompi/mpi/cxx/status_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/topology.h
    /usr/local/include/openmpi/ompi/mpi/cxx/topology_inln.h
    /usr/local/include/openmpi/ompi/mpi/cxx/win.h
    /usr/local/include/openmpi/ompi/mpi/cxx/win_inln.h
    /usr/local/include/vampirtrace
    /usr/local/include/vampirtrace/opari_omp.h
    /usr/local/include/vampirtrace/otf.h
    /usr/local/include/vampirtrace/OTF_CopyHandler.h
    /usr/local/include/vampirtrace/OTF_CopyHandler_stream.h
    /usr/local/include/vampirtrace/OTF_Definitions.h
    /usr/local/include/vampirtrace/OTF_Errno.h
    /usr/local/include/vampirtrace/OTF_File.h
    /usr/local/include/vampirtrace/OTF_FileManager.h
    /usr/local/include/vampirtrace/OTF_Filenames.h
    /usr/local/include/vampirtrace/OTF_HandlerArray.h
    /usr/local/include/vampirtrace/OTF_inttypes.h
    /usr/local/include/vampirtrace/OTF_inttypes_unix.h
    /usr/local/include/vampirtrace/OTF_KeyValue.h
    /usr/local/include/vampirtrace/OTF_MasterControl.h
    /usr/local/include/vampirtrace/OTF_RBuffer.h
    /usr/local/include/vampirtrace/OTF_Reader.h
    /usr/local/include/vampirtrace/OTF_RStream.h
    /usr/local/include/vampirtrace/OTF_Version.h
    /usr/local/include/vampirtrace/OTF_WBuffer.h
    /usr/local/include/vampirtrace/OTF_Writer.h
    /usr/local/include/vampirtrace/OTF_WStream.h
    /usr/local/include/vampirtrace/otfaux.h
    /usr/local/include/vampirtrace/OTFAUX_MsgMatching.h
    /usr/local/include/vampirtrace/OTFAUX_Thumbnail.h
    /usr/local/include/vampirtrace/pomp_lib.h
    /usr/local/include/vampirtrace/vt_inttypes.h
    /usr/local/include/vampirtrace/vt_plugin_cntr.h
    /usr/local/include/vampirtrace/vt_user.h
    /usr/local/include/vampirtrace/vt_user.inc
    /usr/local/include/vampirtrace/vt_user_comment.h
    /usr/local/include/vampirtrace/vt_user_comment.inc
    /usr/local/include/vampirtrace/vt_user_control.h
    /usr/local/include/vampirtrace/vt_user_control.inc
    /usr/local/include/vampirtrace/vt_user_count.h
    /usr/local/include/vampirtrace/vt_user_count.inc
    /usr/local/include/vampirtrace/vt_user_marker.h
    /usr/local/include/vampirtrace/vt_user_marker.inc
    /usr/local/include/vampirtrace/vt_user_message.h
    /usr/local/include/vampirtrace/vt_user_message.inc
    /usr/local/include/vampirtrace/vt_user_region.h
    /usr/local/include/vampirtrace/vt_user_region.inc
    /usr/local/include/vampirtrace/vt_wrap_pthread.h
    /usr/local/lib/libmpi.1.dylib
    /usr/local/lib/libmpi.dylib
    /usr/local/lib/libmpi.la
    /usr/local/lib/libmpi_cxx.1.dylib
    /usr/local/lib/libmpi_cxx.dylib
    /usr/local/lib/libmpi_cxx.la
    /usr/local/lib/libmpi_f77.1.dylib
    /usr/local/lib/libmpi_f77.dylib
    /usr/local/lib/libmpi_f77.la
    /usr/local/lib/libmpi_f90.a
    /usr/local/lib/libmpi_f90.la
    /usr/local/lib/libompitrace.0.dylib
    /usr/local/lib/libompitrace.dylib
    /usr/local/lib/libompitrace.la
    /usr/local/lib/libvt-mpi-unify.0.dylib
    /usr/local/lib/libvt-mpi-unify.a
    /usr/local/lib/libvt-mpi-unify.dylib
    /usr/local/lib/libvt-mpi-unify.la
    /usr/local/lib/libvt-mpi.0.dylib
    /usr/local/lib/libvt-mpi.a
    /usr/local/lib/libvt-mpi.dylib
    /usr/local/lib/libvt-mpi.la
    /usr/local/lib/mpi.mod
    /usr/local/lib/openmpi
    /usr/local/lib/openmpi/libompi_dbg_msgq.la
    /usr/local/lib/openmpi/libompi_dbg_msgq.so
    /usr/local/lib/openmpi/mca_allocator_basic.la
    /usr/local/lib/openmpi/mca_allocator_basic.so
    /usr/local/lib/openmpi/mca_allocator_bucket.la
    /usr/local/lib/openmpi/mca_allocator_bucket.so
    /usr/local/lib/openmpi/mca_bml_r2.la
    /usr/local/lib/openmpi/mca_bml_r2.so
    /usr/local/lib/openmpi/mca_btl_self.la
    /usr/local/lib/openmpi/mca_btl_self.so
    /usr/local/lib/openmpi/mca_btl_sm.la
    /usr/local/lib/openmpi/mca_btl_sm.so
    /usr/local/lib/openmpi/mca_btl_tcp.la
    /usr/local/lib/openmpi/mca_btl_tcp.so
    /usr/local/lib/openmpi/mca_carto_auto_detect.la
    /usr/local/lib/openmpi/mca_carto_auto_detect.so
    /usr/local/lib/openmpi/mca_carto_file.la
    /usr/local/lib/openmpi/mca_carto_file.so
    /usr/local/lib/openmpi/mca_coll_basic.la
    /usr/local/lib/openmpi/mca_coll_basic.so
    /usr/local/lib/openmpi/mca_coll_hierarch.la
    /usr/local/lib/openmpi/mca_coll_hierarch.so
    /usr/local/lib/openmpi/mca_coll_inter.la
    /usr/local/lib/openmpi/mca_coll_inter.so
    /usr/local/lib/openmpi/mca_coll_self.la
    /usr/local/lib/openmpi/mca_coll_self.so
    /usr/local/lib/openmpi/mca_coll_sm.la
    /usr/local/lib/openmpi/mca_coll_sm.so
    /usr/local/lib/openmpi/mca_coll_sync.la
    /usr/local/lib/openmpi/mca_coll_sync.so
    /usr/local/lib/openmpi/mca_coll_tuned.la
    /usr/local/lib/openmpi/mca_coll_tuned.so
    /usr/local/lib/openmpi/mca_crs_none.la
    /usr/local/lib/openmpi/mca_crs_none.so
    /usr/local/lib/openmpi/mca_dpm_orte.la
    /usr/local/lib/openmpi/mca_dpm_orte.so
    /usr/local/lib/openmpi/mca_errmgr_default.la
    /usr/local/lib/openmpi/mca_errmgr_default.so
    /usr/local/lib/openmpi/mca_ess_env.la
    /usr/local/lib/openmpi/mca_ess_env.so
    /usr/local/lib/openmpi/mca_ess_hnp.la
    /usr/local/lib/openmpi/mca_ess_hnp.so
    /usr/local/lib/openmpi/mca_ess_singleton.la
    /usr/local/lib/openmpi/mca_ess_singleton.so
    /usr/local/lib/openmpi/mca_ess_slave.la
    /usr/local/lib/openmpi/mca_ess_slave.so
    /usr/local/lib/openmpi/mca_ess_slurm.la
    /usr/local/lib/openmpi/mca_ess_slurm.so
    /usr/local/lib/openmpi/mca_ess_slurmd.la
    /usr/local/lib/openmpi/mca_ess_slurmd.so
    /usr/local/lib/openmpi/mca_ess_tool.la
    /usr/local/lib/openmpi/mca_ess_tool.so
    /usr/local/lib/openmpi/mca_filem_rsh.la
    /usr/local/lib/openmpi/mca_filem_rsh.so
    /usr/local/lib/openmpi/mca_grpcomm_bad.la
    /usr/local/lib/openmpi/mca_grpcomm_bad.so
    /usr/local/lib/openmpi/mca_grpcomm_basic.la
    /usr/local/lib/openmpi/mca_grpcomm_basic.so
    /usr/local/lib/openmpi/mca_grpcomm_hier.la
    /usr/local/lib/openmpi/mca_grpcomm_hier.so
    /usr/local/lib/openmpi/mca_io_romio.la
    /usr/local/lib/openmpi/mca_io_romio.so
    /usr/local/lib/openmpi/mca_iof_hnp.la
    /usr/local/lib/openmpi/mca_iof_hnp.so
    /usr/local/lib/openmpi/mca_iof_orted.la
    /usr/local/lib/openmpi/mca_iof_orted.so
    /usr/local/lib/openmpi/mca_iof_tool.la
    /usr/local/lib/openmpi/mca_iof_tool.so
    /usr/local/lib/openmpi/mca_maffinity_first_use.la
    /usr/local/lib/openmpi/mca_maffinity_first_use.so
    /usr/local/lib/openmpi/mca_maffinity_hwloc.la
    /usr/local/lib/openmpi/mca_maffinity_hwloc.so
    /usr/local/lib/openmpi/mca_mpool_fake.la
    /usr/local/lib/openmpi/mca_mpool_fake.so
    /usr/local/lib/openmpi/mca_mpool_rdma.la
    /usr/local/lib/openmpi/mca_mpool_rdma.so
    /usr/local/lib/openmpi/mca_mpool_sm.la
    /usr/local/lib/openmpi/mca_mpool_sm.so
    /usr/local/lib/openmpi/mca_notifier_command.la
    /usr/local/lib/openmpi/mca_notifier_command.so
    /usr/local/lib/openmpi/mca_notifier_syslog.la
    /usr/local/lib/openmpi/mca_notifier_syslog.so
    /usr/local/lib/openmpi/mca_odls_default.la
    /usr/local/lib/openmpi/mca_odls_default.so
    /usr/local/lib/openmpi/mca_oob_tcp.la
    /usr/local/lib/openmpi/mca_oob_tcp.so
    /usr/local/lib/openmpi/mca_osc_pt2pt.la
    /usr/local/lib/openmpi/mca_osc_pt2pt.so
    /usr/local/lib/openmpi/mca_osc_rdma.la
    /usr/local/lib/openmpi/mca_osc_rdma.so
    /usr/local/lib/openmpi/mca_paffinity_hwloc.la
    /usr/local/lib/openmpi/mca_paffinity_hwloc.so
    /usr/local/lib/openmpi/mca_plm_rsh.la
    /usr/local/lib/openmpi/mca_plm_rsh.so
    /usr/local/lib/openmpi/mca_plm_slurm.la
    /usr/local/lib/openmpi/mca_plm_slurm.so
    /usr/local/lib/openmpi/mca_pml_bfo.la
    /usr/local/lib/openmpi/mca_pml_bfo.so
    /usr/local/lib/openmpi/mca_pml_cm.la
    /usr/local/lib/openmpi/mca_pml_cm.so
    /usr/local/lib/openmpi/mca_pml_csum.la
    /usr/local/lib/openmpi/mca_pml_csum.so
    /usr/local/lib/openmpi/mca_pml_ob1.la
    /usr/local/lib/openmpi/mca_pml_ob1.so
    /usr/local/lib/openmpi/mca_pml_v.la
    /usr/local/lib/openmpi/mca_pml_v.so
    /usr/local/lib/openmpi/mca_pstat_darwin.la
    /usr/local/lib/openmpi/mca_pstat_darwin.so
    /usr/local/lib/openmpi/mca_pubsub_orte.la
    /usr/local/lib/openmpi/mca_pubsub_orte.so
    /usr/local/lib/openmpi/mca_ras_cm.la
    /usr/local/lib/openmpi/mca_ras_cm.so
    /usr/local/lib/openmpi/mca_ras_slurm.la
    /usr/local/lib/openmpi/mca_ras_slurm.so
    /usr/local/lib/openmpi/mca_rcache_vma.la
    /usr/local/lib/openmpi/mca_rcache_vma.so
    /usr/local/lib/openmpi/mca_rmaps_load_balance.la
    /usr/local/lib/openmpi/mca_rmaps_load_balance.so
    /usr/local/lib/openmpi/mca_rmaps_rank_file.la
    /usr/local/lib/openmpi/mca_rmaps_rank_file.so
    /usr/local/lib/openmpi/mca_rmaps_resilient.la
    /usr/local/lib/openmpi/mca_rmaps_resilient.so
    /usr/local/lib/openmpi/mca_rmaps_round_robin.la
    /usr/local/lib/openmpi/mca_rmaps_round_robin.so
    /usr/local/lib/openmpi/mca_rmaps_seq.la
    /usr/local/lib/openmpi/mca_rmaps_seq.so
    /usr/local/lib/openmpi/mca_rmaps_topo.la
    /usr/local/lib/openmpi/mca_rmaps_topo.so
    /usr/local/lib/openmpi/mca_rmcast_tcp.la
    /usr/local/lib/openmpi/mca_rmcast_tcp.so
    /usr/local/lib/openmpi/mca_rmcast_udp.la
    /usr/local/lib/openmpi/mca_rmcast_udp.so
    /usr/local/lib/openmpi/mca_rml_oob.la
    /usr/local/lib/openmpi/mca_rml_oob.so
    /usr/local/lib/openmpi/mca_routed_binomial.la
    /usr/local/lib/openmpi/mca_routed_binomial.so
    /usr/local/lib/openmpi/mca_routed_cm.la
    /usr/local/lib/openmpi/mca_routed_cm.so
    /usr/local/lib/openmpi/mca_routed_direct.la
    /usr/local/lib/openmpi/mca_routed_direct.so
    /usr/local/lib/openmpi/mca_routed_linear.la
    /usr/local/lib/openmpi/mca_routed_linear.so
    /usr/local/lib/openmpi/mca_routed_radix.la
    /usr/local/lib/openmpi/mca_routed_radix.so
    /usr/local/lib/openmpi/mca_routed_slave.la
    /usr/local/lib/openmpi/mca_routed_slave.so
    /usr/local/lib/openmpi/mca_shmem_mmap.la
    /usr/local/lib/openmpi/mca_shmem_mmap.so
    /usr/local/lib/openmpi/mca_shmem_posix.la
    /usr/local/lib/openmpi/mca_shmem_posix.so
    /usr/local/lib/openmpi/mca_shmem_sysv.la
    /usr/local/lib/openmpi/mca_shmem_sysv.so
    /usr/local/lib/openmpi/mca_sysinfo_darwin.la
    /usr/local/lib/openmpi/mca_sysinfo_darwin.so
    /usr/local/lib/openmpi/mca_topo_unity.la
    /usr/local/lib/openmpi/mca_topo_unity.so
    /usr/local/lib/openmpi/mca_vprotocol_pessimist.la
    /usr/local/lib/openmpi/mca_vprotocol_pessimist.so
    /usr/local/lib/pkgconfig/ompi-c.pc
    /usr/local/lib/pkgconfig/ompi-cxx.pc
    /usr/local/lib/pkgconfig/ompi-f77.pc
    /usr/local/lib/pkgconfig/ompi-f90.pc
    /usr/local/lib/pkgconfig/ompi.pc
    find: /usr/local/mysql-5.5.22-osx10.6-x86/data/performance_schema: Permission denied
    /usr/local/mysql-5.5.22-osx10.6-x86/include/my_compiler.h
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/r/version_compile_machine_basic.result
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/r/version_compile_os_basic.result
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/t/version_compile_machine_basic.test
    /usr/local/mysql-5.5.22-osx10.6-x86/mysql-test/suite/sys_vars/t/version_compile_os_basic.test
    /usr/local/share/man/man1/mpic++.1
    /usr/local/share/man/man1/mpicc.1
    /usr/local/share/man/man1/mpicxx.1
    /usr/local/share/man/man1/mpiexec.1
    /usr/local/share/man/man1/mpif77.1
    /usr/local/share/man/man1/mpif90.1
    /usr/local/share/man/man1/mpirun.1
    /usr/local/share/man/man1/ompi-clean.1
    /usr/local/share/man/man1/ompi-iof.1
    /usr/local/share/man/man1/ompi-probe.1
    /usr/local/share/man/man1/ompi-profiler.1
    /usr/local/share/man/man1/ompi-ps.1
    /usr/local/share/man/man1/ompi-server.1
    /usr/local/share/man/man1/ompi-top.1
    /usr/local/share/man/man1/ompi_info.1
    /usr/local/share/man/man7/ompi_crcp.7
    /usr/local/share/openmpi
    /usr/local/share/openmpi/amca-param-sets
    /usr/local/share/openmpi/amca-param-sets/example.conf
    /usr/local/share/openmpi/help-coll-sync.txt
    /usr/local/share/openmpi/help-dash-host.txt
    /usr/local/share/openmpi/help-ess-base.txt
    /usr/local/share/openmpi/help-hostfile.txt
    /usr/local/share/openmpi/help-mca-base.txt
    /usr/local/share/openmpi/help-mca-bml-r2.txt
    /usr/local/share/openmpi/help-mca-coll-base.txt
    /usr/local/share/openmpi/help-mca-op-base.txt
    /usr/local/share/openmpi/help-mca-param.txt
    /usr/local/share/openmpi/help-mpi-api.txt
    /usr/local/share/openmpi/help-mpi-btl-base.txt
    /usr/local/share/openmpi/help-mpi-btl-sm.txt
    /usr/local/share/openmpi/help-mpi-btl-tcp.txt
    /usr/local/share/openmpi/help-mpi-coll-sm.txt
    /usr/local/share/openmpi/help-mpi-common-sm.txt
    /usr/local/share/openmpi/help-mpi-errors.txt
    /usr/local/share/openmpi/help-mpi-pml-bfo.txt
    /usr/local/share/openmpi/help-mpi-pml-csum.txt
    /usr/local/share/openmpi/help-mpi-pml-ob1.txt
    /usr/local/share/openmpi/help-mpi-runtime.txt
    /usr/local/share/openmpi/help-mpool-base.txt
    /usr/local/share/openmpi/help-odls-default.txt
    /usr/local/share/openmpi/help-ompi-crcp-base.txt
    /usr/local/share/openmpi/help-ompi-dpm-base.txt
    /usr/local/share/openmpi/help-ompi-dpm-orte.txt
    /usr/local/share/openmpi/help-ompi-probe.txt
    /usr/local/share/openmpi/help-ompi-profiler.txt
    /usr/local/share/openmpi/help-ompi-pubsub-orte.txt
    /usr/local/share/openmpi/help-ompi-server.txt
    /usr/local/share/openmpi/help-ompi_info.txt
    /usr/local/share/openmpi/help-oob-tcp.txt
    /usr/local/share/openmpi/help-opal-carto-file.txt
    /usr/local/share/openmpi/help-opal-crs-base.txt
    /usr/local/share/openmpi/help-opal-crs-none.txt
    /usr/local/share/openmpi/help-opal-maffinity-hwloc.txt
    /usr/local/share/openmpi/help-opal-runtime.txt
    /usr/local/share/openmpi/help-opal-shmem-mmap.txt
    /usr/local/share/openmpi/help-opal-shmem-posix.txt
    /usr/local/share/openmpi/help-opal-shmem-sysv.txt
    /usr/local/share/openmpi/help-opal-util.txt
    /usr/local/share/openmpi/help-opal-wrapper.txt
    /usr/local/share/openmpi/help-orte-clean.txt
    /usr/local/share/openmpi/help-orte-filem-base.txt
    /usr/local/share/openmpi/help-orte-filem-rsh.txt
    /usr/local/share/openmpi/help-orte-iof.txt
    /usr/local/share/openmpi/help-orte-notifier-command.txt
    /usr/local/share/openmpi/help-orte-odls-base.txt
    /usr/local/share/openmpi/help-orte-ps.txt
    /usr/local/share/openmpi/help-orte-rmaps-base.txt
    /usr/local/share/openmpi/help-orte-rmaps-lb.txt
    /usr/local/share/openmpi/help-orte-rmaps-resilient.txt
    /usr/local/share/openmpi/help-orte-rmaps-rr.txt
    /usr/local/share/openmpi/help-orte-rmaps-seq.txt
    /usr/local/share/openmpi/help-orte-rmaps-topo.txt
    /usr/local/share/openmpi/help-orte-rmcast-udp.txt
    /usr/local/share/openmpi/help-orte-runtime.txt
    /usr/local/share/openmpi/help-orte-snapc-base.txt
    /usr/local/share/openmpi/help-orte-top.txt
    /usr/local/share/openmpi/help-orted.txt
    /usr/local/share/openmpi/help-orterun.txt
    /usr/local/share/openmpi/help-plm-base.txt
    /usr/local/share/openmpi/help-plm-rsh.txt
    /usr/local/share/openmpi/help-plm-slurm.txt
    /usr/local/share/openmpi/help-ras-base.txt
    /usr/local/share/openmpi/help-ras-slurm.txt
    /usr/local/share/openmpi/help-regex.txt
    /usr/local/share/openmpi/help-rmaps_rank_file.txt
    /usr/local/share/openmpi/help-rmcast-base.txt
    /usr/local/share/openmpi/mpic++-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpic++-wrapper-data.txt
    /usr/local/share/openmpi/mpicc-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpicc-wrapper-data.txt
    /usr/local/share/openmpi/mpicxx-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpicxx-wrapper-data.txt
    /usr/local/share/openmpi/mpif77-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpif77-wrapper-data.txt
    /usr/local/share/openmpi/mpif90-vt-wrapper-data.txt
    /usr/local/share/openmpi/mpif90-wrapper-data.txt
    /usr/local/share/openmpi/openmpi-valgrind.supp
    /usr/local/share/openmpi/ortec++-wrapper-data.txt
    /usr/local/share/openmpi/ortecc-wrapper-data.txt
    /usr/local/share/vampirtrace
    /usr/local/share/vampirtrace/doc
    /usr/local/share/vampirtrace/doc/ChangeLog
    /usr/local/share/vampirtrace/doc/LICENSE
    /usr/local/share/vampirtrace/doc/opari
    /usr/local/share/vampirtrace/doc/opari/ChangeLog
    /usr/local/share/vampirtrace/doc/opari/lacsi01.pdf
    /usr/local/share/vampirtrace/doc/opari/LICENSE
    /usr/local/share/vampirtrace/doc/opari/opari-logo-100.gif
    /usr/local/share/vampirtrace/doc/opari/Readme.html
    /usr/local/share/vampirtrace/doc/otf
    /usr/local/share/vampirtrace/doc/otf/ChangeLog
    /usr/local/share/vampirtrace/doc/otf/LICENSE
    /usr/local/share/vampirtrace/doc/otf/otfprofile.pdf
    /usr/local/share/vampirtrace/doc/otf/otfprofile_clustering.pdf
    /usr/local/share/vampirtrace/doc/otf/otftools.pdf
    /usr/local/share/vampirtrace/doc/otf/specification.pdf
    /usr/local/share/vampirtrace/doc/UserManual.html
    /usr/local/share/vampirtrace/doc/UserManual.pdf
    /usr/local/share/vampirtrace/doc/vtsetup
    /usr/local/share/vampirtrace/doc/vtsetup/ChangeLog
    /usr/local/share/vampirtrace/doc/vtsetup/LICENSE
    /usr/local/share/vampirtrace/FILTER.SPEC
    /usr/local/share/vampirtrace/GROUPS.SPEC
    /usr/local/share/vampirtrace/libtool
    /usr/local/share/vampirtrace/METRICS.SPEC
    /usr/local/share/vampirtrace/TAUINST.SPEC
    /usr/local/share/vampirtrace/vtc++-wrapper-data.txt
    /usr/local/share/vampirtrace/vtcc-wrapper-data.txt
    /usr/local/share/vampirtrace/vtcxx-wrapper-data.txt
    /usr/local/share/vampirtrace/vtf77-wrapper-data.txt
    /usr/local/share/vampirtrace/vtf90-wrapper-data.txt
    /usr/local/share/vampirtrace/vtsetup-data.dtd
    /usr/local/share/vampirtrace/vtsetup-data.xml
    /usr/local/texlive/2011/bin/universal-darwin/teckit_compile
    /usr/local/texlive/2011/bin/x86_64-darwin/teckit_compile
    /usr/local/texlive/2011/texmf-dist/doc/generic/wsuipa/compilefonts
    /usr/local/texlive/2011/texmf-dist/doc/latex/apprends-latex/exemples/seraphin-lampion.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_1.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_2.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_3.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/arsclassica/Italian/Immagini/esempio_4.jpg
    /usr/local/texlive/2011/texmf-dist/doc/latex/bardiag/example/compile.all
    /usr/local/texlive/2011/texmf-dist/doc/latex/cmpica
    /usr/local/texlive/2011/texmf-dist/doc/latex/cmpica/README
    /usr/local/texlive/2011/texmf-dist/doc/latex/oberdiek/stampinclude.pdf
    /usr/local/texlive/2011/texmf-dist/doc/latex/suftesi/esempiofrontespizio.pdf
    /usr/local/texlive/2011/texmf-dist/doc/latex/tkz-fct/latex/TKZdoc-fct-compilation.tex
    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl
    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl/license.xmp
    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl/README
    /usr/local/texlive/2011/texmf-dist/doc/latex/xmpincl/xmpincl.pdf
    /usr/local/texlive/2011/texmf-dist/doc/metapost/base/mpintro.pdf
    /usr/local/texlive/2011/texmf-dist/doc/metapost/base/source-tutorial/compilation.tex
    /usr/local/texlive/2011/texmf-dist/doc/metapost/base/source-tutorial/mpintro.bib
    /usr/local/texlive/2011/texmf-dist/doc/metapost/base/source-tutorial/mpintro.ltx
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/cmpica.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/cmpicab.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/cmpicati.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/pcpunct.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/cmpica/pica.mf
    /usr/local/texlive/2011/texmf-dist/fonts/source/public/ibygrk/sampi4.mf
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpica.tfm
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpicab.tfm
    /usr/local/texlive/2011/texmf-dist/fonts/tfm/public/cmpica/cmpicati.tfm
    /usr/local/texlive/2011/texmf-dist/source/latex/oberdiek/stampinclude.dtx
    /usr/local/texlive/2011/texmf-dist/source/latex/prosper/compilation.fig
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl/xmpincl.dtx
    /usr/local/texlive/2011/texmf-dist/source/latex/xmpincl/xmpincl.ins
    /usr/local/texlive/2011/texmf-dist/tex/latex/oberdiek/stampinclude.sty
    /usr/local/texlive/2011/texmf-dist/tex/latex/prosper/compilation.eps
    /usr/local/texlive/2011/texmf-dist/tex/latex/xmpincl
    /usr/local/texlive/2011/texmf-dist/tex/latex/xmpincl/xmpincl.sty
    /usr/local/texlive/2011/tlpkg/texworks/Lib/sre_compile.pyc
    /usr/local/texlive/2011/tlpkg/texworks/texworks-help/TeXworks-manual/en/CompilingTw.html
    /usr/local/texlive/2011/tlpkg/tlpobj/cmpica.tlpobj
    /usr/local/texlive/2011/tlpkg/tlpobj/xmpincl.tlpobj

    Comment


    • #17
      You are compiling with /usr/bin/mpicxx, but you are probably not linking with the related library.

      This information will be provided by


      Code:
      echo $LD_LIBRARY_PATH
      Code:
      /usr/bin/mpiexec --version
      Code:
      /usr/local/bin/mpiexec --version
      We are closing in on the problem.

      Originally posted by Saratoga View Post
      Hi again,

      I got this,


      echo $PATH
      /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin
      echo $LD_LIBRARY_PATH

      type mpiexec
      mpiexec is /usr/bin/mpiexec

      type mpicxx
      mpicxx is /usr/bin/mpicxx

      type ompi_info
      ompi_info is /usr/bin/ompi_info

      find /usr/local|grep mpi
      /usr/local/bin/mpic++
      /usr/local/bin/mpic++-vt
      /usr/local/bin/mpicc
      /usr/local/bin/mpicc-vt
      /usr/local/bin/mpicxx
      /usr/local/bin/mpicxx-vt
      /usr/local/bin/mpiexec
      /usr/local/bin/mpif77
      /usr/local/bin/mpif77-vt
      /usr/local/bin/mpif90
      /usr/local/bin/mpif90-vt
      /usr/local/bin/mpirun
      /usr/local/bin/ompi-clean
      /usr/local/bin/ompi-iof
      /usr/local/bin/ompi-probe
      /usr/local/bin/ompi-profiler
      /usr/local/bin/ompi-ps
      /usr/local/bin/ompi-server
      /usr/local/bin/ompi-top
      /usr/local/bin/ompi_info
      /usr/local/bin/otfmerge-mpi
      /usr/local/bin/otfprofile-mpi
      /usr/local/bin/vtfilter-mpi
      /usr/local/bin/vtfiltergen-mpi
      /usr/local/bin/vtunify-mpi

      Comment


      • #18
        Hi again Sebastian,

        I think you found the problem.

        I have both 1.2.8 and 1.6 versions

        echo $LD_LIBRARY_PATH

        /usr/bin/mpiexec --version
        mpiexec (OpenRTE) 1.2.8

        Report bugs to http://www.open-mpi.org/community/help/

        /usr/local/bin/mpiexec --version
        mpiexec (OpenRTE) 1.6

        Report bugs to http://www.open-mpi.org/community/help/

        Thanks for you enormous help

        Comment


        • #19
          OK good luck with that.



          Originally posted by Saratoga View Post
          Hi again Sebastian,

          I think you found the problem.

          I have both 1.2.8 and 1.6 versions

          echo $LD_LIBRARY_PATH

          /usr/bin/mpiexec --version
          mpiexec (OpenRTE) 1.2.8

          Report bugs to http://www.open-mpi.org/community/help/

          /usr/local/bin/mpiexec --version
          mpiexec (OpenRTE) 1.6

          Report bugs to http://www.open-mpi.org/community/help/

          Thanks for you enormous help

          Comment

          Latest Articles

          Collapse

          • seqadmin
            Essential Discoveries and Tools in Epitranscriptomics
            by seqadmin




            The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
            Yesterday, 07:01 AM
          • seqadmin
            Current Approaches to Protein Sequencing
            by seqadmin


            Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
            04-04-2024, 04:25 PM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, 04-11-2024, 12:08 PM
          0 responses
          57 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-10-2024, 10:19 PM
          0 responses
          53 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-10-2024, 09:21 AM
          0 responses
          45 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-04-2024, 09:00 AM
          0 responses
          55 views
          0 likes
          Last Post seqadmin  
          Working...
          X