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Old 05-20-2012, 12:13 PM   #1
camelbbs
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Location: United States

Join Date: Jun 2011
Posts: 49
Default cuffmerge question

HI,

I want to ask what is the differece between put hg19.gtf in -g option and put hg19.gtf in the gtf list:

cuffmerge -g hg19.gtf list.txt
cuffmerge list.txt (including hg19.gtf)

I run them and got a smaller file in the 2nd method, what is the difference?

Anyone can give a intro.Thanks,

Jiang
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