Dear all,
After aligning a paired-end library to the reference genome using TopHat2 with settings: inner mate distance = 0, standard deviation inner mate distance = 200 (based on the traces profile), I can't find any concordantly aligned pair. Is this normal?
Thanks,
Steven
After aligning a paired-end library to the reference genome using TopHat2 with settings: inner mate distance = 0, standard deviation inner mate distance = 200 (based on the traces profile), I can't find any concordantly aligned pair. Is this normal?
Thanks,
Steven