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Old 01-20-2014, 10:03 PM   #1
jaysantos
Junior Member
 
Location: Philippines

Join Date: Apr 2013
Posts: 3
Default Error in Pacbio Assembly

Hi all,

Can you help me on how to solve this error:

/usr/local/wgs-8.0/Linux-amd64/bin/buildUnitigs: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/wgs-8.0/Linux-amd64/bin/buildUnitigs)

The OS is CentOS 6.2.

I tried to look at libstdc+=.so.6 and found out that there's no GLIBCXX_3.4.15

strings /usr/lib64/libstdc++.so.6 | grep GLIBC
GLIBCXX_3.4
GLIBCXX_3.4.1
GLIBCXX_3.4.2
GLIBCXX_3.4.3
GLIBCXX_3.4.4
GLIBCXX_3.4.5
GLIBCXX_3.4.6
GLIBCXX_3.4.7
GLIBCXX_3.4.8
GLIBCXX_3.4.9
GLIBCXX_3.4.10
GLIBCXX_3.4.11
GLIBCXX_3.4.12
GLIBCXX_3.4.13
GLIBC_2.2.5
GLIBC_2.3
GLIBC_2.4
GLIBC_2.3.2
GLIBCXX_FORCE_NEW
GLIBCXX_DEBUG_MESSAGE_LENGTH

How can I install GLIBCXX 3.4.15 in CentOS 6.2?


Any inputs are highly appreciated.

THanks,
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Old 01-21-2014, 02:31 AM   #2
sklages
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Location: Berlin, DE

Join Date: May 2008
Posts: 628
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Probably it is better to build celera assembler on your system instead of downloading the binaries. This way the binaries are build with the libraries from your system.
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Old 01-21-2014, 03:10 AM   #3
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,062
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You could try the "hack" noted on this page and see if it works: http://unix.stackexchange.com/questi...15-on-centos-6
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