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Old 12-04-2019, 10:21 AM   #1
hche
Junior Member
 
Location: UK

Join Date: Dec 2019
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Default BWA problem

BWA version 0.7.12
Indexed Genome GRCh38

bwa mem -t 1 BWA_GRCh38 input.fq > output.sam

when I try to map the following sequence to GRCh38. BWA stuck forever and do not stop. Can anyone reproduce it?


input.fq
@V300037498L4C001R0040237633/2
GGCTCTGCAGACAGAGCTGCAATGAAGACAGACACCGTTCCCTGCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCTCCCCCCTCCCCTCCCCCCGCGC
+
FFFEFFFFFF9FFFEFFCFFFFFFFFFEBFFFFFFEB;13;;*5.2;CDA7:8@AB=,?@86C)4B*/:.*B%+B73.D4CA)5&7>8709;1,4/<'(,
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Old 12-04-2019, 10:33 AM   #2
hche
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Join Date: Dec 2019
Posts: 2
Default

Sorry I post to wrong forum. Admin please move this to Bioinformatics.
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