I am trying to filter a vcf file of variants down to just those that reside within exons. I'm working with the malaria parasite Plasmodium falciparum.
Is there a software you'd recommend for this purpose?
Most of the ones I've found seem to be designed almost exclusively for use with human data. I tried working with SNPEff, but I can only get it to annotate everything. I can't seem to get it to filter out variants I'm not interested in.
Is there a software you'd recommend for this purpose?
Most of the ones I've found seem to be designed almost exclusively for use with human data. I tried working with SNPEff, but I can only get it to annotate everything. I can't seem to get it to filter out variants I'm not interested in.
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