SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Get fasta amino-acid BLAST result aliealexandre Bioinformatics 8 03-25-2015 04:09 AM
Align two sets of amino acid sequences zerhacker General 5 12-02-2014 04:37 PM
Complexity of amino acid sequence mudit Bioinformatics 0 03-28-2013 03:15 AM
Genomic coordinates for amino acid variation ... how ? niyl_p Bioinformatics 1 05-24-2012 06:30 PM
amino acid sequence from GTF file mhadidi2002 Bioinformatics 0 03-06-2012 06:03 AM

Reply
 
Thread Tools
Old 08-25-2015, 12:36 PM   #1
satishg
Member
 
Location: USA

Join Date: Aug 2014
Posts: 15
Smile Sorting Amino Acid Sequences

I have a a set of three fasta files with amino acid sequences. Can you suggest me scripts to separate out sequences that are common, and as well that are different among each of the three fasta files?

Last edited by satishg; 08-25-2015 at 12:39 PM.
satishg is offline   Reply With Quote
Old 08-25-2015, 12:49 PM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,814
Default

Look into CD-HIT (http://weizhongli-lab.org/cdhit_suite/cgi-bin/index.cgi). Depending on how large your files are you may need to contact the lab.
GenoMax is offline   Reply With Quote
Old 08-25-2015, 01:02 PM   #3
satishg
Member
 
Location: USA

Join Date: Aug 2014
Posts: 15
Default

Thanks ! I was able to install it locally. I will explore it.
satishg is offline   Reply With Quote
Reply

Tags
amino acid, fasta, sort

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 06:48 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO