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Old 11-18-2009, 12:11 AM   #1
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Location: Xishuangbanna

Join Date: Nov 2009
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Default Bowtie warning: skip solexa** because it is less than 4 characters.

Hello everyone,

I saw this warning, skip solexa** because it is less than 4 characters. My reads are solexa data with 51bp each and I want Bowtie to skip those less than 10 characters. I do not want to trim them. I just do not need those reads with too many 'N's. Can I set that without do something to the data beforehand?

Thanks very much~
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