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  • CLUSTAL W vs mega

    Hi,

    I would like to do multiple sequence alignment but I am wondering which of the two is better (Clustal W vs MEGA). Advise

  • #2
    Either would be fine for doing a plain MSA. If you are going to do phylogenetic analysis then MEGA would be preferred.
    Last edited by GenoMax; 03-18-2015, 04:59 AM.

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    • #3
      Thanks.

      Is it true that Clustal W is a program found in softwares such as MEGA (versions) or the two are separate

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      • #4
        ClustalW is a general purpose alignment algorithm that is available as a standalone program and is also incorporated in MEGA.

        ClustalW is now being superseded by a new tool called clustal omega (specially for protein sequences).

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