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  • exon and intron numbers of genes

    Hi All,

    Please excuse me if this is going to be a repeat of any earlier post, I have been searching through various posts thinking someone must have asked this before but couldn't find.
    I have a bed file with genomic coordinates and I want to match with gene structure to find the exon and intron numbers of a gene that match/overlap the coordinates. Thanks for reading the post, I really appreciate for taking your time.

    Rama

  • #2
    Hello Rama,

    PeakAnalyzer will do it for you. If you work with human or mouse genome the annotation is also provided within the program.

    Comment


    • #3
      Thank you, I never used it but sure will give a try.

      Comment

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