Hi,
I am new to PacBio. I have visited the pacBio site. However could not clearly understand what files are generated by the primary analysis or base calling. Is it the CLR or CCS files? how do we actually go about generating the filtered read files. If I am interested to use the SMRT pipe, what input does it take?
Also, can anybody please suggest a de novo assembler that works well with PacBio data?
I am new to PacBio. I have visited the pacBio site. However could not clearly understand what files are generated by the primary analysis or base calling. Is it the CLR or CCS files? how do we actually go about generating the filtered read files. If I am interested to use the SMRT pipe, what input does it take?
Also, can anybody please suggest a de novo assembler that works well with PacBio data?
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