Dear All,
We have ChIP-seq data from one Treatment data set and two negative control data sets (1:- Mock IP and 2:-Input/genomic DNA). We have called peaks for Treatment vs Mock and Treatment vs Input/genomics DNA using MACS. How can we derive final peaks from both datasets.
Are those regions can be called final peaks which are common in both the runs?
We have ChIP-seq data from one Treatment data set and two negative control data sets (1:- Mock IP and 2:-Input/genomic DNA). We have called peaks for Treatment vs Mock and Treatment vs Input/genomics DNA using MACS. How can we derive final peaks from both datasets.
Are those regions can be called final peaks which are common in both the runs?
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