Dear all,
I have downloaded the hg19 from UCSC and want to combine all the chromosome together to generate the reference genome to be indexd in BWA. However, there are some files like chrUn_g*.fa, chr1_gl*_random.fa, and chrM.fa. Should I combine these files together with the autosome and X,Y
chromosome or throw them away before build the reference genome?
Thanks a billion!
June
I have downloaded the hg19 from UCSC and want to combine all the chromosome together to generate the reference genome to be indexd in BWA. However, there are some files like chrUn_g*.fa, chr1_gl*_random.fa, and chrM.fa. Should I combine these files together with the autosome and X,Y
chromosome or throw them away before build the reference genome?
Thanks a billion!
June
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