Hi,
I am performing an alignment and am interested in several target regions. I am interested in finding out the minimum and maximum coverage in each region (meaning the base with the minimum coverage and the base with the maximum coverage in each region) for quality control purposes. I already have a sorted bam file.
Does anyone know how I can do this? Is there a program that can help?
Thanks!
I am performing an alignment and am interested in several target regions. I am interested in finding out the minimum and maximum coverage in each region (meaning the base with the minimum coverage and the base with the maximum coverage in each region) for quality control purposes. I already have a sorted bam file.
Does anyone know how I can do this? Is there a program that can help?
Thanks!
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