Ion RNA-Seq

sixguns · 11-28-2011, 05:05 PM

Hi,

Does anyone know any tools can be use in Ion RNA-Seq data for junction and isoforms prediction as TOPHAT and CUFFLINKS for Illumina platform?

11-28-2011, 06:14 PM

You can use the two programs you just mentioned for starters. PGM data comes out as a fastq.

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11-28-2011, 05:05 PM	#1
sixguns Junior Member Location: Shanghai Join Date: May 2010 Posts: 8	Ion RNA-Seq Hi, Does anyone know any tools can be use in Ion RNA-Seq data for junction and isoforms prediction as TOPHAT and CUFFLINKS for Illumina platform?

11-28-2011, 06:14 PM	#2
SeqAA Guest Posts: n/a	You can use the two programs you just mentioned for starters. PGM data comes out as a fastq.