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Old 11-28-2011, 05:05 PM   #1
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Location: Shanghai

Join Date: May 2010
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Default Ion RNA-Seq


Does anyone know any tools can be use in Ion RNA-Seq data for junction and isoforms prediction as TOPHAT and CUFFLINKS for Illumina platform?
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Old 11-28-2011, 06:14 PM   #2

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You can use the two programs you just mentioned for starters. PGM data comes out as a fastq.
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