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  • Time to run variant caller plugin for Ion Torrent

    I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
    Thank you!

  • #2
    The PGM doesn't have a 10G chip.

    Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller).
    @bioinformer
    http://www.linkedin.com/in/jonathanjacobs

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    • #3
      Torrent Suite for Mac

      I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module

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