Dear all,
I would like to know if there is a tool out there that can handle the junctions file coming out from Cufflinks and treat them as for instance the DEXSeq Bioconductor package, but instead of exon usage it would do junctions usage analysis (or transcript isoform deconvolution).
Thanks.
I would like to know if there is a tool out there that can handle the junctions file coming out from Cufflinks and treat them as for instance the DEXSeq Bioconductor package, but instead of exon usage it would do junctions usage analysis (or transcript isoform deconvolution).
Thanks.
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