I have a degenerate motif, i.e AMNCDAYMNNTCA that I find clustered several times within 200bp of a 9kb contig. I need to test for enrichment there and qualify the likelihood of that happening (i.e six times in 200bp of seven total occurrences in 9kb of sequence). Does anyone have a suggestion for a tool that will give a probability? I'm trying to show functional enrichment...
Thanks!
Thanks!
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