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  • Have a problem installing Bowtie

    Hi! I am a beginner in the field of bioinformatic and trying to install Bowtie on my mac and server (linux) that I use. I followed Bowtie's instruction and executed the make command from inside the Bowtie directory but I got the following error:
    make: *** No targets specified and no makefile found. Stop.
    I also tried gmake command as suggested by the instruction but it didn't work too

    Does anyone have an idea how to fix this problem?
    Last edited by Hamed; 05-04-2016, 02:17 AM.

  • #2
    Can you not use the pre-compiled binaries that are available for both OS X and Linux (https://sourceforge.net/projects/bow...owtie/1.1.2/)? These are ready to run and do not need compilation.

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    • #3
      I had downloaded it from the same page but the problem was that the instruction file inside the package belongs to not pre-compiled version so I followed the instruction and tried to compile it

      I could use it without any compilation!

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      • #4
        Assuming you are looking for Bowtie v.1 here are:

        Mac binary: https://sourceforge.net/projects/bow...4.zip/download
        Linux binary: https://sourceforge.net/projects/bow...4.zip/download

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        • #5
          Thanks a lot!

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