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|PubMed: Comparison of methods for quantification of subtle splice variants.||Newsbot!||Literature Watch||0||10-29-2009 06:20 AM|
|04-02-2017, 10:29 PM||#1|
Join Date: Mar 2017
Tool to find splice variants
I have several experimental groups with more than one samples each.
I want to find out (for a group of genes) which isoforms/splice variants are expressed (and if they are differentially expressed).
Ideally, I need a program which tells me the exons of each isoform (genomic location and fpkm/rpkm)..
So far I tried Cuffdiff and SGSeq (R-package), but I am not too happy with the output.
Which tool, program, script couldt fit my experimental design the best?
|isoforms, rna-seq, rna-seq advice, splice variant, splice-index|