Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
extract fasta sequences from multifasta file using partial or gene names SeqTroubles Bioinformatics 4 04-25-2017 01:04 PM
Extract multiple fasta sequences from a fasta file based on sequenes entomology Bioinformatics 38 12-19-2015 07:28 PM
BLAST Database error: No alias or index file found for protein database gt259 Bioinformatics 2 05-25-2015 12:31 AM
Searching for protein in fasta file thh32 Bioinformatics 1 10-21-2014 12:16 AM
blast database creation ( multiple file ) NicoBxl Bioinformatics 3 10-05-2010 02:40 AM

Thread Tools
Old 08-05-2018, 12:41 PM   #1
Junior Member
Location: United Kingdom

Join Date: Aug 2018
Posts: 1
Default Compile FASTA file - search for multiple genome names in protein database


I am not experienced and have a task to search multiple genomes in FASTA database.

I tried Proteome Discoverer, which works perfect if only one protein reference/sequence is to be found. However, there is a need for more than 2000 unknown sequences to be matched to FASTA file (in this case Uniprot database).

Please help, which program to use to match multiple partial sequences, which are saved in excel file to FASTA database file and compile all the findings in another fasta file?
westgigo is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:26 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO