Hi all,
I'm new to the bioinformatics world and am looking for an assembly/alignment program that would work well for the mammalian mitochondrial genome. I've played around with Mira and Velvet for de Novo assembly but could use some advice. I have 454 reads and a divergent reference genome. I also will be mapping ancient DNA reads once I have a reference. Any suggestions would be great!
Thanks!
I'm new to the bioinformatics world and am looking for an assembly/alignment program that would work well for the mammalian mitochondrial genome. I've played around with Mira and Velvet for de Novo assembly but could use some advice. I have 454 reads and a divergent reference genome. I also will be mapping ancient DNA reads once I have a reference. Any suggestions would be great!
Thanks!
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