Hi folks!
I recently got my exome sequencing raw data from macrogen. Along with providing the raw data, they have also provided an analysis file in the excel format listing all the SNPs with all the relevant information. I have few questions regarding those files.
1. How do I filter through the excel file and find the relevant mutations?
2. For each sample I have an excel file for germline DNA and for tumor DNA. How do I compare the two and find out true somatic mutations?
I am a newbie, so ain't good with handling raw data. However, in the mean time, I want to see if meaningful information can be extracted from the excel files.
I will really appreciate any input from the community.
Thanks,
Sadiq
I recently got my exome sequencing raw data from macrogen. Along with providing the raw data, they have also provided an analysis file in the excel format listing all the SNPs with all the relevant information. I have few questions regarding those files.
1. How do I filter through the excel file and find the relevant mutations?
2. For each sample I have an excel file for germline DNA and for tumor DNA. How do I compare the two and find out true somatic mutations?
I am a newbie, so ain't good with handling raw data. However, in the mean time, I want to see if meaningful information can be extracted from the excel files.
I will really appreciate any input from the community.
Thanks,
Sadiq
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