SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
How to replace select reads in a bam file? Heisman Bioinformatics 8 01-02-2012 03:49 PM
Getting Reads from Bam file empyrean Bioinformatics 4 10-12-2011 01:57 PM
Query bam file and assemble reads dustar1986 Bioinformatics 10 09-29-2011 08:48 PM
Obtaining reference identical reads from a BAM file Sakti Bioinformatics 2 05-17-2011 11:40 AM
Extracting unique reads from a .ma or .bam file? JohnK SOLiD 14 06-04-2010 01:32 AM

Reply
 
Thread Tools
Old 04-26-2012, 01:41 PM   #1
tomjan
Junior Member
 
Location: pl

Join Date: Apr 2012
Posts: 8
Default Why there is more reads in BAM file than I can see in tview?

Hello group,

Why I can extract more reads from bam files that I can see in 'samtools tview'???
How to force 'samtools tview' to extract same number of reads I can see in tview?
Or how to force tview to show all reads?

Is it depend on MAPQ field value? if yes, please tell me how?

Thank you,

tj
tomjan is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:04 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO