Hi everyone!
I am new to this forum because I started working with rnaseq & microarray analysis.
I have carbonstarvation data of an organism. I have the rnaseq and microarray data of 4 different conditions (day 0, day1, day3, day6)
I have the analyzed the DEG by Affy and DESeq.
The rnaseq results are in a csv file and the microarray results are in a text file
> colnames(RNAseq.data_df)
[1] "ID" "mean.d0" "mean.d1" "mean.d3" "mean.d6" "FC.d1.d0" "FC.d3.d0"
[8] "FC.d6.d0" "logFC.d1.d0" "logFC.d3.d0" "logFC.d6.d0" "pval.d1.d0" "pval.d3.d0" "pval.d6.d0"
[15] "qval.d1.d0" "qval.d3.d0" "qval.d6.d0"
> colnames(MA.data)
[1] "X" "GSM542228.CEL.gz"
[3] "GSM542335.CEL.gz" "GSM542336.CEL.gz"
[5] "GSM971682_080805MJA_ANIGERa_100480_03.CEL.gz" "GSM971683_080805MJA_ANIGERa_100480_07.CEL.gz"
[7] "GSM971684_080805MJA_ANIGERa_100480_04.CEL.gz" "GSM971685_080805MJA_ANIGERa_100480_08.CEL.gz"
[9] "GSM971686_080805MJA_ANIGERa_100480_05.CEL.gz" "GSM971687_080805MJA_ANIGERa_100480_09.CEL.gz"
[11] "mean.d0" "mean.d1"
[13] "mean.d3" "mean.d6"
[15] "FC.d1...d0" "FC.d3...d0"
[17] "FC.d6...d0" "pValue.d1...d0"
[19] "pValue.d3...d0" "pValue.d6...d0"
[21] "qValue.d1...d0" "qValue.d3...d0"
[23] "qValue.d6...d0"
I would like to make a Venn-diagram to compare the 2 datasets. I really dont know where to start and how to make the data comparable. Does anyone has any tips?
Thank you!
I am new to this forum because I started working with rnaseq & microarray analysis.
I have carbonstarvation data of an organism. I have the rnaseq and microarray data of 4 different conditions (day 0, day1, day3, day6)
I have the analyzed the DEG by Affy and DESeq.
The rnaseq results are in a csv file and the microarray results are in a text file
> colnames(RNAseq.data_df)
[1] "ID" "mean.d0" "mean.d1" "mean.d3" "mean.d6" "FC.d1.d0" "FC.d3.d0"
[8] "FC.d6.d0" "logFC.d1.d0" "logFC.d3.d0" "logFC.d6.d0" "pval.d1.d0" "pval.d3.d0" "pval.d6.d0"
[15] "qval.d1.d0" "qval.d3.d0" "qval.d6.d0"
> colnames(MA.data)
[1] "X" "GSM542228.CEL.gz"
[3] "GSM542335.CEL.gz" "GSM542336.CEL.gz"
[5] "GSM971682_080805MJA_ANIGERa_100480_03.CEL.gz" "GSM971683_080805MJA_ANIGERa_100480_07.CEL.gz"
[7] "GSM971684_080805MJA_ANIGERa_100480_04.CEL.gz" "GSM971685_080805MJA_ANIGERa_100480_08.CEL.gz"
[9] "GSM971686_080805MJA_ANIGERa_100480_05.CEL.gz" "GSM971687_080805MJA_ANIGERa_100480_09.CEL.gz"
[11] "mean.d0" "mean.d1"
[13] "mean.d3" "mean.d6"
[15] "FC.d1...d0" "FC.d3...d0"
[17] "FC.d6...d0" "pValue.d1...d0"
[19] "pValue.d3...d0" "pValue.d6...d0"
[21] "qValue.d1...d0" "qValue.d3...d0"
[23] "qValue.d6...d0"
I would like to make a Venn-diagram to compare the 2 datasets. I really dont know where to start and how to make the data comparable. Does anyone has any tips?
Thank you!
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