Is there any documentation on how to use BAM files of SOLiD Bioscope-mapped reads in Cufflinks 0.9.x?
I have run Cufflinks using SAM-converted BAM files with subsequent alterations, but I'm eager to see how it compares using a BAM file as input.
Are there any additional flags necessary to tell Cufflinks about the input file?
I have run Cufflinks using SAM-converted BAM files with subsequent alterations, but I'm eager to see how it compares using a BAM file as input.
Are there any additional flags necessary to tell Cufflinks about the input file?
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