Hello,
I'm a student at the University of Florida and am doing a research project with a PI at the university of Florida and I am trying to find INDELs in two evolved strains compared to an ancestor strain. I have the sequence data (done using 454) for both evolved strains and the ancestor strain. I've done numerous searches on google for free indel software but can't seem to get the few I've found to work. I was hoping that someone more experienced here might be able to point me in the right direction.
Specifically, I am comparing both evolved strains to the ancestor strain to find insertions and deletions both evolved laboratory strains have that the ancestor does not. (I assume we will then compare the evolved strains to one another, but that hasn't yet been revealed to me).
I apologize ahead of time if I didn't supply you with any information you might need to answer this question. Feel free to ask!
Thanks so much for any help.
William
I'm a student at the University of Florida and am doing a research project with a PI at the university of Florida and I am trying to find INDELs in two evolved strains compared to an ancestor strain. I have the sequence data (done using 454) for both evolved strains and the ancestor strain. I've done numerous searches on google for free indel software but can't seem to get the few I've found to work. I was hoping that someone more experienced here might be able to point me in the right direction.
Specifically, I am comparing both evolved strains to the ancestor strain to find insertions and deletions both evolved laboratory strains have that the ancestor does not. (I assume we will then compare the evolved strains to one another, but that hasn't yet been revealed to me).
I apologize ahead of time if I didn't supply you with any information you might need to answer this question. Feel free to ask!
Thanks so much for any help.
William
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