Hi,
I actually try to run ChromHMM on a new cell line for which I have the following markers (H3K4me1, H3K4me3, H3K9me3, H3K27ac, H3K27me3, H3K36me3, Dnase Hotspot and input) and I have some difficulties to retrieve right annotation corresponding to different chromatin state. Does somebody have some advices/tips to share?
Thanks in advance,
I actually try to run ChromHMM on a new cell line for which I have the following markers (H3K4me1, H3K4me3, H3K9me3, H3K27ac, H3K27me3, H3K36me3, Dnase Hotspot and input) and I have some difficulties to retrieve right annotation corresponding to different chromatin state. Does somebody have some advices/tips to share?
Thanks in advance,