Hello all,
using tophat v1.1.1 x86_64 for paired-end (2-lanes) Illumina RNAseq
data, in the file "logs/long_spanning_reads.log" I see many messages
"warning: multiple closures found for read", using specified min-intron-length
and max-intron-length values. Is this something to be concerned about?
Do any parameters need to be adjusted?
Is this related to the bug-fix corrected in v1.1.2 released Oct 26 - "A sorting issue for pairs that align in multiple places has been fixed". Thanks.
using tophat v1.1.1 x86_64 for paired-end (2-lanes) Illumina RNAseq
data, in the file "logs/long_spanning_reads.log" I see many messages
"warning: multiple closures found for read", using specified min-intron-length
and max-intron-length values. Is this something to be concerned about?
Do any parameters need to be adjusted?
Is this related to the bug-fix corrected in v1.1.2 released Oct 26 - "A sorting issue for pairs that align in multiple places has been fixed". Thanks.
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