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Old 08-01-2016, 02:41 PM   #1
ronaldrcutler
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Location: Virginia

Join Date: May 2016
Posts: 80
Default Velvet referenced assembly

Hello all,

I see that Velvet has a Columbus module to assemble genomes using a reference as a template. Although it also says this is best used for transcriptome assembly and identification of breakpoints.

Has anybody used this for a genome assembly? Where one uses contigs from a de novo assembly as input against a closely related reference genome?

Thanks
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